Data were analyzed using publicly available (
https://github.com/gkaguirrelab/vepMELAanalysis), custom MATLAB software. The signal was subject to a 0.5- to 150-Hz bandpass filter to remove nonphysiologic oscillations and a bandstop filter at 60 Hz to remove electrical line noise. Trials with any time point >0.08 mV or all values <0.02 mV were removed to eliminate noisy trials due to poor electrode placement; this constituted 152 out of a total of 6,300 trials in the study (2.4%). The median response across trials in the time domain provided the cortical VEP. The first 0.5 s of the stimulus presentation were discarded to eliminate the onset response, leaving the remaining 1.5-s epoch. Because the 1.625-Hz and 3.25-Hz stimuli were not bin centered for the Fourier transform with a 1.5-s response epoch, time windows of 1.231 s and 1.538 s were used, respectively, for the analysis of these stimuli. The signal was converted from the time domain into the frequency domain using a discrete Fourier transform. Responses contained a peak at the fundamental flicker frequency of the visual stimulus, which can be seen in power spectral density (PSD) plots (
Supplementary Figure S5). Prominent higher harmonic responses are also evident. Each PSD was fit using a previously described technique (
Haller et al., 2018) to estimate and remove the aperiodic (nonoscillatory) component of the ssVEP (
Supplementary Figure S5). Consistent with previous reports (
Haller et al., 2018), the aperiodic signal was greatest at low frequencies and is well described by 1/frequency function. There were no significant differences in the aperiodic signal between groups or stimulus conditions (
Supplementary Figure S6). The aperiodic fit was subtracted from the original signal to obtain the periodic signal (
Supplementary Figure S5). Median responses for the fundamental flicker frequency of each stimulus were calculated across groups. A two-sample
t test was used for subject demographic comparison. The median responses for each group and spectral direction were fit with a difference-of-exponentials model that describes temporal sensitivity (
Hawken, Shapley, & Grosof, 1996). Temporal sensitivity fits were used to calculate the peak frequency and peak amplitude for each curve. Estimates of the variability of these measures in our population were obtained by repeating the fitting over 1,000 bootstrap resamples across subjects (with replacement) and calculating 95% confidence intervals.
In supplemental analyses, we examined the response at the second harmonic frequency. As the 2F harmonic of the 30-Hz stimulus overlaps with powerline noise at 60 Hz, it could not be measured directly. Instead, the amplitude of the harmonic response was estimated. We observed that there was a linear relationship between the frequencies of the 1, 2, 3, and 4 harmonics and the response amplitudes. Thus, the amplitude of response at 30 and 90 Hz was used to estimate the response at 60 Hz in this analysis.
In supplemental analyses, we also tested for the presence of narrowband gamma oscillations. This was done by calculating Thomson's multitaper PSD estimate for each trial and taking the median value across trials.