To test which factors—overall stimulus (i.e., ON-time), task-relevant period (i.e., ISI), and motor output (i.e., reaction time)—have an influence on blink latency, we conducted a repeated-measures, two-factor ANCOVA for the visual and auditory modalities separately. Our results from the ANCOVA showed that there was a significant main effect of ON-time and ISI, but not for reaction time, in both modalities. Specifically, for the visual condition, there were significant effects of ON-time, F(2, 502) = 8.5, p = 0.0002, and ISI, F(1, 502) = 14.8, p = 0.0001, but not reaction time, F(1, 502) = 0.02, p = 0.88. Similarly, for the auditory, there were significant effects of ON-time, F(2, 357) = 3.13, p = 0.04, and ISI, F(1, 357) = 5.38, p = 0.02, but not reaction time, F(2, 357) = 5.8057e-04, p = 0.9. The individual influences and the corresponding post hoc tests are presented in detail below.